How gut bacteria communicate within our bodies, build special relationship

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Communication is vital to any successful relationship. Researchers from the Institute of Food Research and the University of East Anglia have discovered how the beneficial bacteria in our guts communicate with our own cells.This is a key step in understanding how our bodies maintain a close relationship with the population of gut bacteria that plays crucial roles in maintaining our health, fighting infection and digesting our food.A study, published in the journal Cell Reports, shows that the gut bacteria produce an enzyme that modifies signalling in cells lining the gut. The enzyme also has another role in breaking down food components.”Our study provides a breakthrough in understanding how bacteria communicate across different kingdoms to influence our own cells’ behavior, as well as how we digest our food,” said Dr Regis Stentz from the IFR, which is strategically funded by the Biotechnology and Biological Sciences Research Council.We all rely on trillions of bacteria in our gut to break down certain components of our diet. One example is phytate, the form phosphorus takes in cereals and vegetables. Broken down phytate is a source of vital nutrients, but in its undigested form it has detrimental properties. It binds to important minerals preventing them being taken up by the body, causing conditions like anemia, especially in developing countries. Phytate also leads to excess phosphorus leaching into the soil from farm animal waste, and feed supplements are used to minimize this.But despite the importance of phytate, we know very little about how it is broken down in our gut. To address this Dr Stentz and colleagues screened the genomes of hundreds of different species of gut bacteria. They found, in one of the most prominent gut bacteria species, an enzyme able to break down phytate. In collaboration with Norwich Research Park colleagues at the University of East Anglia, they crystallized this enzyme and solved its 3D structure. …


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How evolution shapes the geometries of life

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Why does a mouse’s heart beat about the same number of times in its lifetime as an elephant’s, although the mouse lives about a year, while an elephant sees 70 winters come and go? Why do small plants and animals mature faster than large ones? Why has nature chosen such radically different forms as the loose-limbed beauty of a flowering tree and the fearful symmetry of a tiger?These questions have puzzled life scientists since ancient times. Now an interdisciplinary team of researchers from the University of Maryland and the University of Padua in Italy propose a thought-provoking answer based on a famous mathematical formula that has been accepted as true for generations, but never fully understood. In a paper published the week of Feb. 17, 2014 in the Proceedings of the National Academy of Sciences, the team offers a re-thinking of the formula known as Kleiber’s Law. Seeing this formula as a mathematical expression of an evolutionary fact, the team suggests that plants’ and animals’ widely different forms evolved in parallel, as ideal ways to solve the problem of how to use energy efficiently.If you studied biology in high school or college, odds are you memorized Kleiber’s Law: metabolism equals mass to the three-quarter power. This formula, one of the few widely held tenets in biology, shows that as living things get larger, their metabolisms and their life spans increase at predictable rates. Named after the Swiss biologist Max Kleiber who formulated it in the 1930s, the law fits observations on everything from animals’ energy intake to the number of young they bear. It’s used to calculate the correct human dosage of a medicine tested on mice, among many other things.But why does Kleiber’s Law hold true? …


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Why white dots appear larger than equal size black dots: How Galileo"s visual illusion works in the mind"s eye

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Scientists have studied a visual illusion first discovered by Galileo Galilei, and found that it occurs because of the surprising way our eyes see lightness and darkness in the world. Their results advance our understanding of how our brains are wired for seeing white versus black objects.The work was done by Jens Kremkow and collaborators in the laboratories of Jose Manuel Alonso and Qasim Zaidi at the State University of New York College of Optometry. It will be published on February 10 of 2014 in the Proceedings of the National Academy of Sciences.Galileo was puzzled by the fact that the appearance of the planets depended on whether one looked with the naked eye or with a telescope. Viewed directly, planets seemed “expanded” and had “a radiant crown,” which made Venus looked eight to ten times larger than Jupiter even though Jupiter was four times larger. Though Galileo realized this size illusion was not created by the object — but by his eyes — he did not understand why or how.He mused, “Either because their light is refracted in the moisture that covers the pupil, or because it is reflected from the edges of the eyelids and these reflected rays are diffused over the pupil, or for some other reason.” Generations of scientists following Galileo continued to assume the illusion was caused by blur or similar optical effects. However, though blur can distort size, it does not explain why Venus looks larger than Jupiter with the naked eye. Hermann von Helmholtz — the venerable 19th Century German physician-physicist — was the first to realize that something else was needed to explain the illusion, as he described in his Treatise on Physiological Optics.Only now, with Kremkow and colleagues’ new study, has science finally zoomed in and illuminated the scope of the problem. It’s a feature of how we see everything, no less. By examining the responses of neurons in the visual system of the brain — to both light stimuli and dark stimuli — the neuroscientists discovered that, whereas dark stimuli result in a faithful neural response that accurately represents their size, light stimuli on the contrary result in non-linear and exaggerated responses that make the stimulus look larger. So white spots on a black background look bigger than same-sized black spots on white background, and Galileo’s glowing stellar objects are not really as big as they might appear to the unaided eye.This effect is responsible for how we see everything from textures and faces — based on their dark parts in bright daylight — to why it is easier to read this very page with black-on-white lettering, rather than white-on-black (a well known, and until now, unexplained phenomenon). …


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New live-cell printing technology works like ancient Chinese woodblocking

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HOUSTON — ( Feb. 6, 2014 ) — With a nod to 3rd century Chinese woodblock printing and children’s rubber stamp toys, researchers in Houston have developed a way to print living cells onto any surface, in virtually any shape. Unlike recent, similar work using inkjet printing approaches, almost all cells survive the process, scientists report in this week’s Proceedings of the National Academy of Sciences.The researchers, led by Houston Methodist Research Institute nanomedicine faculty member Lidong Qin, Ph.D., say their approach produces 2-D cell arrays in as little as half an hour, prints the cells as close together as 5 micrometers (most animal cells are 10 to 30 micrometers wide), and allows the use of many different cell types. They’ve named the technology Block-Cell-Printing, or BloC-Printing.”We feel the current technologies are inadequate,” Qin said. “Inkjet-based cell printing leaves many of the cells damaged or dead. We wanted to see if we could invent a tool that helps researchers obtain arrays of cells that are alive and still have full activity.”Recent work to print cells in two and three dimensions using electricity-gated inkjet technology have been largely successful, but sometimes only half of the printed cells survive the printing process — a source of frustration for many laboratory scientists.”Cell printing is used in so many different ways now — for drug development and in studies of tissue regeneration, cell function, and cell-cell communication,” Qin said. “Such things can only be done when cells are alive and active. A survival rate of 50 to 80 percent is typical as cells exit the inkjet nozzles. By comparison, we are seeing close to 100 percent of cells in BloC-Printing survive the printing process.”BloC-Printing manipulates microfluidic physics to guide living cells into hook-like traps in the silicone mold. Cells flow down a column in the mold, past trapped cells to the next available slot, eventually creating a line of cells (in a grid of such lines). …


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